Test Details
Methodology
Fluorescence in situ hybridization (FISH ) and in situ chromosome cell culturing of amniocytes to investigate numerical and/or structural chromosome abnormalities. SNP microarray analysis from uncultured cells is performed using the Cytoscan® HD platform, which uses more than 743,000 SNP probes and 1,953,000 NPCN probes with a median spacing of 0.88 kb. If DNA yield on uncultured cells is inadequate, analysis will be performed on cultured cells. If cultures are needed, additional days will be required to complete testing.
Result Turnaround Time
10 - 13 days
Turnaround time is defined as the usual number of days from the date of pickup of a specimen for testing to when the result is released to the ordering provider. In some cases, additional time should be allowed for additional confirmatory or additional reflex tests. Testing schedules may vary.
Use
This test is used for rapid identification of common prenatal aneuploidy (specific for X, Y, 13, 18, 21). If abnormal, reflex to banded chromosomes to obtain fetal karyotype. This test allows prenatal detection of chromosomal rearrangements, aneuploidy, or mosaicism. Such groups include women who:
• are age 35 years or older
• have a previous child having chromosome abnormality or multiple congenital abnormalities
• have had two or more previous spontaneous abortions
• have a family history of a chromosome abnormality
• are known carriers of an X-linked disorder
• are 31 years of age or older with twin pregnancies
• have abnormal fetal ultrasound findings
• have a positive maternal serum marker screen
Additional biochemical or molecular tests may be performed on the cultured amniocytes. Fetal loss rate at 14 to 18 week sampling is considered to be 0.5%, and 2% to 3% at 10 to 13 weeks. Chorionic villus sampling (CVS) may be safer than early amniocentesis for early prenatal diagnosis of cytogenetic abnormalities. The risk of miscarriage with CVS is 1% to 1.5% but the risk of maternal infection appears to be higher with CVS than with amniocentesis. Cytogenetic analyses using such samples allow for an early gestational testing based on a 10- to 11-week placental biopsy and a 8-day cytogenetic study. Most failures are due to an inappropriate biopsy containing only maternal decidua.
Chromosomal aberration were found in 4.6% of fetuses in women older than 38 to 40 years of age. Trisomy 21 was the most common abnormality (62%). Klinefelter syndrome (11%) and trisomy 18 (11%) were next most frequent in the cases of advanced maternal age. Prenatal diagnosis is possible for more than 1000 inherited diseases. Most are inherited in an autosomal recessive manner. Antenatal molecular diagnosis has become available for cystic fibrosis, muscular dystrophy, sickle cell anemia, hemophilia, and many other genetic abnormalities. This can be done from either cultured amniotic fluid cells or chorionic villous sampling. A normal FISH result reflexes to the SNP assay, which will detect chromosomal imbalances that could be associated with developmental delay/congenital anomalies. It provides detection of possible uniparental disomy of any chromosome, the percent and location of homozygosity, including the degree of identity by descent.
• are age 35 years or older • have a previous child having chromosome abnormality or multiple congenital abnormalities • have had two or more previous spontaneous abortions • have a family history of a chromosome abnormality • are known carriers of an X-linked disorder • are 31 years of age or older with twin pregnancies • have abnormal fetal ultrasound findings • have a positive maternal serum marker screen Additional biochemical or molecular tests may be performed on the cultured amniocytes. Fetal loss rate at 14 to 18 week sampling is considered to be 0.5%, and 2% to 3% at 10 to 13 weeks. Chorionic villus sampling (CVS) may be safer than early amniocentesis for early prenatal diagnosis of cytogenetic abnormalities. The risk of miscarriage with CVS is 1% to 1.5% but the risk of maternal infection appears to be higher with CVS than with amniocentesis. Cytogenetic analyses using such samples allow for an early gestational testing based on a 10- to 11-week placental biopsy and a 8-day cytogenetic study. Most failures are due to an inappropriate biopsy containing only maternal decidua. Chromosomal aberration were found in 4.6% of fetuses in women older than 38 to 40 years of age. Trisomy 21 was the most common abnormality (62%). Klinefelter syndrome (11%) and trisomy 18 (11%) were next most frequent in the cases of advanced maternal age. Prenatal diagnosis is possible for more than 1000 inherited diseases. Most are inherited in an autosomal recessive manner. Antenatal molecular diagnosis has become available for cystic fibrosis, muscular dystrophy, sickle cell anemia, hemophilia, and many other genetic abnormalities. This can be done from either cultured amniotic fluid cells or chorionic villous sampling. A normal FISH result reflexes to the SNP assay, which will detect chromosomal imbalances that could be associated with developmental delay/congenital anomalies. It provides detection of possible uniparental disomy of any chromosome, the percent and location of homozygosity, including the degree of identity by descent. |
This test is used for rapid identification of common prenatal aneuploidy (specific for X, Y, 13, 18, 21). If abnormal, reflex to banded chromosomes to obtain fetal karyotype. This test allows prenatal detection of chromosomal rearrangements, aneuploidy, or mosaicism. Such groups include women who: • are age 35 years or older • have a previous child having chromosome abnormality or multiple congenital abnormalities • have had two or more previous spontaneous abortions • have a family history of a chromosome abnormality • are known carriers of an X-linked disorder • are 31 years of age or older with twin pregnancies • have abnormal fetal ultrasound findings • have a positive maternal serum marker screen Additional biochemical or molecular tests may be performed on the cultured amniocytes. Fetal loss rate at 14 to 18 week sampling is considered to be 0.5%, and 2% to 3% at 10 to 13 weeks. Chorionic villus sampling (CVS) may be safer than early amniocentesis for early prenatal diagnosis of cytogenetic abnormalities. The risk of miscarriage with CVS is 1% to 1.5% but the risk of maternal infection appears to be higher with CVS than with amniocentesis. Cytogenetic analyses using such samples allow for an early gestational testing based on a 10- to 11-week placental biopsy and a 8-day cytogenetic study. Most failures are due to an inappropriate biopsy containing only maternal decidua. Chromosomal aberration were found in 4.6% of fetuses in women older than 38 to 40 years of age. Trisomy 21 was the most common abnormality (62%). Klinefelter syndrome (11%) and trisomy 18 (11%) were next most frequent in the cases of advanced maternal age. Prenatal diagnosis is possible for more than 1000 inherited diseases. Most are inherited in an autosomal recessive manner. Antenatal molecular diagnosis has become available for cystic fibrosis, muscular dystrophy, sickle cell anemia, hemophilia, and many other genetic abnormalities. This can be done from either cultured amniotic fluid cells or chorionic villous sampling. A normal FISH result reflexes to the SNP assay, which will detect chromosomal imbalances that could be associated with developmental delay/congenital anomalies. It provides detection of possible uniparental disomy of any chromosome, the percent and location of homozygosity, including the degree of identity by descent. |
Special Instructions
Pertinent medical findings should accompany request for FISH. A completed Informed Consent and Prenatal Chromosome SNP Microarray Questionnaire should accompany specimens. Call 800-345-4363 to request form. In the case of a reflex to microarray, concurrent maternal contamination (MCC) studies are recommended.
Limitations
FISH detects only the most common aneuploidies found in the second trimester. Abnormal results will reflex to banded chromosome analysis. Although the overall culture success rate is reported as >99%, culture failure can result. Reasons include, but are not limited to lack of amniocytes in the fluid, and contamination of the fluid with bacteria or yeast. Normal FISH results will reflex to the microarray. FISH will not detect balanced rearrangements and may not detect low level mosaicism. The SNP assay does not detect balanced rearrangements, low-level mosaicism (<10%), marker chromosomes that only contain heterochromatin or tetraploidy. Extensive maternal cell contamination will limit the sensitivity of the assay.
Specimen Requirements
Specimen
Amniotic fluid
Volume
25 mL or greater
Minimum Volume
25 mL amniotic fluid (Note: This volume may not allow for repeat testing.)
25 mL |
25 mL amniotic fluid (Note: This volume may not allow for repeat testing.) |
Container
Sterile plastic conical tube
Collection Instructions
Discard first 2 mL of fluid aspirated to avoid maternal cell contamination. Specimen is collected in a 20 mL sterile syringe and transferred asceptically to sterile tubes to be transported to LabCorp. Request form is completed and accompanies specimen and miscellaneous slip to the laboratory.
Storage Instructions
Maintain specimen at room temperature.
Patient Preparation
The patient preferably should have had ultrasound studies (to verify fetal life, detect multiple gestation, confirm gestational age, localize fetus/placenta).
Causes for Rejection
Specimen found not to be amniotic fluid; gross contamination with blood cells; frozen specimen; container with rubber stopper (rubber is toxic to amniocytes); quantity not sufficient for analysis
References
LOINC® Map
Order Code | Order Code Name | Order Loinc | Result Code | Result Code Name | UofM | Result LOINC |
---|---|---|---|---|---|---|
511966 | InSight FISH Amnio Rfx CMA/Chr | 511895 | Cells Counted | 64095-3 | ||
511966 | InSight FISH Amnio Rfx CMA/Chr | 511896 | Cells Analyzed | 64092-0 | ||
511966 | InSight FISH Amnio Rfx CMA/Chr | 511897 | Cytogenetic Diagnosis | 57317-0 | ||
511966 | InSight FISH Amnio Rfx CMA/Chr | 511898 | Cytogenetic Interpretation | 55192-9 | ||
511966 | InSight FISH Amnio Rfx CMA/Chr | 511901 | Specimen Type | 31208-2 | ||
511966 | InSight FISH Amnio Rfx CMA/Chr | 511902 | Director Review: | 48672-0 | ||
511966 | InSight FISH Amnio Rfx CMA/Chr | 511594 | Reflex | N/A | ||
Order Code | 511966 | |||||
Order Code Name | InSight FISH Amnio Rfx CMA/Chr | |||||
Order Loinc | ||||||
Result Code | 511895 | |||||
Result Code Name | Cells Counted | |||||
UofM | ||||||
Result LOINC | 64095-3 | |||||
Order Code | 511966 | |||||
Order Code Name | InSight FISH Amnio Rfx CMA/Chr | |||||
Order Loinc | ||||||
Result Code | 511896 | |||||
Result Code Name | Cells Analyzed | |||||
UofM | ||||||
Result LOINC | 64092-0 | |||||
Order Code | 511966 | |||||
Order Code Name | InSight FISH Amnio Rfx CMA/Chr | |||||
Order Loinc | ||||||
Result Code | 511897 | |||||
Result Code Name | Cytogenetic Diagnosis | |||||
UofM | ||||||
Result LOINC | 57317-0 | |||||
Order Code | 511966 | |||||
Order Code Name | InSight FISH Amnio Rfx CMA/Chr | |||||
Order Loinc | ||||||
Result Code | 511898 | |||||
Result Code Name | Cytogenetic Interpretation | |||||
UofM | ||||||
Result LOINC | 55192-9 | |||||
Order Code | 511966 | |||||
Order Code Name | InSight FISH Amnio Rfx CMA/Chr | |||||
Order Loinc | ||||||
Result Code | 511901 | |||||
Result Code Name | Specimen Type | |||||
UofM | ||||||
Result LOINC | 31208-2 | |||||
Order Code | 511966 | |||||
Order Code Name | InSight FISH Amnio Rfx CMA/Chr | |||||
Order Loinc | ||||||
Result Code | 511902 | |||||
Result Code Name | Director Review: | |||||
UofM | ||||||
Result LOINC | 48672-0 | |||||
Order Code | 511966 | |||||
Order Code Name | InSight FISH Amnio Rfx CMA/Chr | |||||
Order Loinc | ||||||
Result Code | 511594 | |||||
Result Code Name | Reflex | |||||
UofM | ||||||
Result LOINC | N/A |
Order Code | Order Name | Result Code | Result Name | UofM | Result LOINC | |
---|---|---|---|---|---|---|
Reflex 1 | 510098 | Chromosome Microarray | 510216 | Chromosome Microarray | N/A | |
Reflex 1 | ||||||
Order Code | 510098 | |||||
Order Name | Chromosome Microarray | |||||
Result Code | 510216 | |||||
Result Name | Chromosome Microarray | |||||
UofM | ||||||
Result LOINC | N/A |
Order Code | Order Name | Result Code | Result Name | UofM | Result LOINC | |
---|---|---|---|---|---|---|
Reflex 1 | 510098 | Chromosome Microarray | 510043 | Specimen Type | 31208-2 | |
Reflex 1 | ||||||
Order Code | 510098 | |||||
Order Name | Chromosome Microarray | |||||
Result Code | 510043 | |||||
Result Name | Specimen Type | |||||
UofM | ||||||
Result LOINC | 31208-2 |
Order Code | Order Name | Result Code | Result Name | UofM | Result LOINC | |
---|---|---|---|---|---|---|
Reflex 1 | 510098 | Chromosome Microarray | 510044 | # of Genotyping Targets | N/A | |
Reflex 1 | ||||||
Order Code | 510098 | |||||
Order Name | Chromosome Microarray | |||||
Result Code | 510044 | |||||
Result Name | # of Genotyping Targets | |||||
UofM | ||||||
Result LOINC | N/A |
Order Code | Order Name | Result Code | Result Name | UofM | Result LOINC | |
---|---|---|---|---|---|---|
Reflex 1 | 510098 | Chromosome Microarray | 510045 | Array Type | N/A | |
Reflex 1 | ||||||
Order Code | 510098 | |||||
Order Name | Chromosome Microarray | |||||
Result Code | 510045 | |||||
Result Name | Array Type | |||||
UofM | ||||||
Result LOINC | N/A |
Order Code | Order Name | Result Code | Result Name | UofM | Result LOINC | |
---|---|---|---|---|---|---|
Reflex 1 | 510098 | Chromosome Microarray | 510048 | Diagnosis | 48000-4 | |
Reflex 1 | ||||||
Order Code | 510098 | |||||
Order Name | Chromosome Microarray | |||||
Result Code | 510048 | |||||
Result Name | Diagnosis | |||||
UofM | ||||||
Result LOINC | 48000-4 |
Order Code | Order Name | Result Code | Result Name | UofM | Result LOINC | |
---|---|---|---|---|---|---|
Reflex 1 | 510098 | Chromosome Microarray | 510049 | Interpretation | 50398-7 | |
Reflex 1 | ||||||
Order Code | 510098 | |||||
Order Name | Chromosome Microarray | |||||
Result Code | 510049 | |||||
Result Name | Interpretation | |||||
UofM | ||||||
Result LOINC | 50398-7 |
Order Code | Order Name | Result Code | Result Name | UofM | Result LOINC | |
---|---|---|---|---|---|---|
Reflex 1 | 510098 | Chromosome Microarray | 510061 | Director Review | 48672-0 | |
Reflex 1 | ||||||
Order Code | 510098 | |||||
Order Name | Chromosome Microarray | |||||
Result Code | 510061 | |||||
Result Name | Director Review | |||||
UofM | ||||||
Result LOINC | 48672-0 |
Order Code | Order Name | Result Code | Result Name | UofM | Result LOINC | |
---|---|---|---|---|---|---|
Reflex 1 | 510098 | Chromosome Microarray | 512123 | 11502-2 | ||
Reflex 1 | ||||||
Order Code | 510098 | |||||
Order Name | Chromosome Microarray | |||||
Result Code | 512123 | |||||
Result Name | ||||||
UofM | ||||||
Result LOINC | 11502-2 |
Order Code | Order Name | Result Code | Result Name | UofM | Result LOINC | |
---|---|---|---|---|---|---|
Reflex 1 | 052066 | Chromosome, Amniotic Fluid | 052138 | Cells Counted | 64095-3 | |
Reflex 1 | ||||||
Order Code | 052066 | |||||
Order Name | Chromosome, Amniotic Fluid | |||||
Result Code | 052138 | |||||
Result Name | Cells Counted | |||||
UofM | ||||||
Result LOINC | 64095-3 |
Order Code | Order Name | Result Code | Result Name | UofM | Result LOINC | |
---|---|---|---|---|---|---|
Reflex 1 | 052066 | Chromosome, Amniotic Fluid | 052139 | Colonies | 64096-1 | |
Reflex 1 | ||||||
Order Code | 052066 | |||||
Order Name | Chromosome, Amniotic Fluid | |||||
Result Code | 052139 | |||||
Result Name | Colonies | |||||
UofM | ||||||
Result LOINC | 64096-1 |
Order Code | Order Name | Result Code | Result Name | UofM | Result LOINC | |
---|---|---|---|---|---|---|
Reflex 1 | 052066 | Chromosome, Amniotic Fluid | 052140 | Cells Analyzed | 64092-0 | |
Reflex 1 | ||||||
Order Code | 052066 | |||||
Order Name | Chromosome, Amniotic Fluid | |||||
Result Code | 052140 | |||||
Result Name | Cells Analyzed | |||||
UofM | ||||||
Result LOINC | 64092-0 |
Order Code | Order Name | Result Code | Result Name | UofM | Result LOINC | |
---|---|---|---|---|---|---|
Reflex 1 | 052066 | Chromosome, Amniotic Fluid | 052141 | Cells Karyotyped | 64091-2 | |
Reflex 1 | ||||||
Order Code | 052066 | |||||
Order Name | Chromosome, Amniotic Fluid | |||||
Result Code | 052141 | |||||
Result Name | Cells Karyotyped | |||||
UofM | ||||||
Result LOINC | 64091-2 |
Order Code | Order Name | Result Code | Result Name | UofM | Result LOINC | |
---|---|---|---|---|---|---|
Reflex 1 | 052066 | Chromosome, Amniotic Fluid | 052143 | GTG Band Resolution Achieved | 64093-8 | |
Reflex 1 | ||||||
Order Code | 052066 | |||||
Order Name | Chromosome, Amniotic Fluid | |||||
Result Code | 052143 | |||||
Result Name | GTG Band Resolution Achieved | |||||
UofM | ||||||
Result LOINC | 64093-8 |
Order Code | Order Name | Result Code | Result Name | UofM | Result LOINC | |
---|---|---|---|---|---|---|
Reflex 1 | 052066 | Chromosome, Amniotic Fluid | 052144 | Cytogenetic Diagnosis | 62356-1 | |
Reflex 1 | ||||||
Order Code | 052066 | |||||
Order Name | Chromosome, Amniotic Fluid | |||||
Result Code | 052144 | |||||
Result Name | Cytogenetic Diagnosis | |||||
UofM | ||||||
Result LOINC | 62356-1 |
Order Code | Order Name | Result Code | Result Name | UofM | Result LOINC | |
---|---|---|---|---|---|---|
Reflex 1 | 052066 | Chromosome, Amniotic Fluid | 052033 | Cytogenetic Interpretation | 62357-9 | |
Reflex 1 | ||||||
Order Code | 052066 | |||||
Order Name | Chromosome, Amniotic Fluid | |||||
Result Code | 052033 | |||||
Result Name | Cytogenetic Interpretation | |||||
UofM | ||||||
Result LOINC | 62357-9 |
Order Code | Order Name | Result Code | Result Name | UofM | Result LOINC | |
---|---|---|---|---|---|---|
Reflex 1 | 052066 | Chromosome, Amniotic Fluid | 052146 | Specimen Type | 48002-0 | |
Reflex 1 | ||||||
Order Code | 052066 | |||||
Order Name | Chromosome, Amniotic Fluid | |||||
Result Code | 052146 | |||||
Result Name | Specimen Type | |||||
UofM | ||||||
Result LOINC | 48002-0 |
Order Code | Order Name | Result Code | Result Name | UofM | Result LOINC | |
---|---|---|---|---|---|---|
Reflex 1 | 052066 | Chromosome, Amniotic Fluid | 052034 | Director Review: | 48672-0 | |
Reflex 1 | ||||||
Order Code | 052066 | |||||
Order Name | Chromosome, Amniotic Fluid | |||||
Result Code | 052034 | |||||
Result Name | Director Review: | |||||
UofM | ||||||
Result LOINC | 48672-0 |
Order Code | Order Name | Result Code | Result Name | UofM | Result LOINC | |
---|---|---|---|---|---|---|
Reflex 1 | 052066 | Chromosome, Amniotic Fluid | 512123 | 11502-2 | ||
Reflex 1 | ||||||
Order Code | 052066 | |||||
Order Name | Chromosome, Amniotic Fluid | |||||
Result Code | 512123 | |||||
Result Name | ||||||
UofM | ||||||
Result LOINC | 11502-2 |