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α1-Antitrypsin Deficiency, DNA Analysis

CPT

81332

Synonyms
  • Alpha1-Antitrypsin Deficiency, Genotype
  • Protease Inhibitor (PI)

Test Details

Methodology

Two variants are analyzed: c.1096 G>A (p. Glu366Lys), commonly referred to as the Z allele or PI*Z c.863 A>T (p.Glu288Val), commonly referred to as the S allele or PI*S. DNA analysis of the S and Z alleles in the SERPINA1 gene (NM_000295.4) is performed by multiplex allele-specific PCR amplification followed by gel electrophoresis.

Result Turnaround Time

6 - 12 days

Turnaround time is defined as the usual number of days from the date of pickup of a specimen for testing to when the result is released to the ordering provider. In some cases, additional time should be allowed for additional confirmatory or additional reflex tests. Testing schedules may vary.

Related Documents

Use

Aids in establishing a diagnosis of individuals suspected to have alpha-1 antitrypsin deficiency

Limitations

Results should be combined with clinical information for the most accurate interpretation. Molecular-based testing is highly accurate, but as in any laboratory test, rare diagnostic errors may occur. False positive or false negative results may occur for reasons that include genetic variants, blood transfusions, bone marrow transplantation, somatic or tissue-specific mosaicism, mislabeled samples, or erroneous representation of family relationships.

This test was developed and its performance characteristics determined by Labcorp. It has not been cleared or approved by the Food and Drug Administration.

References

Sandhaus RA, Turino G, Brantly ML, et al. The Diagnosis and Management of Alpha-1 Antitrypsin Deficiency in the Adult. Chronic Obstr Pulm Dis. 2016 Jun 6;3(3):668-682.28848891
Stoller JK, Hupertz V, Aboussouan LS. Alpha-1 Antitrypsin Deficiency. In: GeneReviews® [Internet]. Seattle (WA): University of Washington, Seattle; 1993–2022.2006 Oct 27 [updated 2020 May 21].20301692

Custom Additional Information

Alpha-1 antitrypsin deficiency is an autosomal recessive metabolic disorder with variable severity and age at onset. Signs and symptoms may include increased risk for chronic obstructive lung disease that typically manifests after age 30, liver disease, and liver cancer. Liver disease can be present in infancy as neonatal cholestasis (jaundice) or in adulthood as cirrhosis and fibrosis. Lung and liver disease may be accelerated by environmental exposures such as smoking and excessive alcohol use. Established treatments for COPD and emphysema are used to treat lung disease; lung and/or liver transplantation may be an option for those with severe disease. Intravenous augmentation therapy may be available for patients who meet criteria. The ZZ and SZ genotypes account for more than 95% of individuals with severe alpha-1 antitrypsin deficiency. To rule out other variants, further testing of symptomatic individuals heterozygous for one variant (S or Z) or with negative results may include phenotyping (PI typing), AAT level testing, and/or expanded genotyping. Genetic coordinators are available for health care providers to discuss results and for information on how to order additional testing, if desired, at 1-800-345-GENE.

Specimen Requirements

Specimen

Whole blood, amniotic fluid, chorionic villus sample (CVS) (submission of maternal blood is required for fetal testing), or Labcorp buccal swab kit (buccal swab collection kit contains instructions for use of a buccal swab)

Volume

7 mL whole blood, 10 mL amniotic fluid, 20 mg CVS, or Labcorp buccal swab kit

Minimum Volume

3 mL whole blood, 5 mL amniotic fluid, 10 mg CVS, or two buccal swabs

Container

Lavender-top (EDTA) tube, yellow-top (ACD) tube, sterile plastic conical tube or two confluent T-25 flasks for fetal testing, or Labcorp buccal swab kit

Storage Instructions

Maintain specimen at room temperature or refrigerate.

Causes for Rejection

Frozen specimen; hemolysis; quantity not sufficient for analysis; improper container; one buccal swab; wet buccal swab

LOINC® Map

Order Code Order Code Name Order Loinc Result Code Result Code Name UofM Result LOINC
511881 Alpha-1-Antitrypsin Deficiency 511883 AAT, DNA Analysis 21723-2
511881 Alpha-1-Antitrypsin Deficiency 511885 Additional Information: 21726-5
511881 Alpha-1-Antitrypsin Deficiency 511884 Electronically Signed by: 72486-4
Order Code511881
Order Code NameAlpha-1-Antitrypsin Deficiency
Order Loinc
Result Code511883
Result Code NameAAT, DNA Analysis
UofM
Result LOINC21723-2
Order Code511881
Order Code NameAlpha-1-Antitrypsin Deficiency
Order Loinc
Result Code511885
Result Code NameAdditional Information:
UofM
Result LOINC21726-5
Order Code511881
Order Code NameAlpha-1-Antitrypsin Deficiency
Order Loinc
Result Code511884
Result Code NameElectronically Signed by:
UofM
Result LOINC72486-4