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EPCAM Deletion/Duplication Analysis

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Synonyms
  • Lynch Syndrome

Test Details

Methodology

Multiplex ligation-dependent probe amplification (MLPA)

Result Turnaround Time

35 - 42 days

Related Documents

Use

Can confirm a clinical diagnosis of HNPCC and allow early diagnosis in family members, guiding preventive measures. Hereditary nonpolyposis colorectal cancer (HNPCC) is an autosomal-dominant, genetically heterogeneous syndrome caused by heterozygous mutations in mismatch repair genes (MMR). HNPCC is estimated to account for 4% to 6% of colorectal cancer and is characterized by early onset, a predominant proximal location of colon cancer, multiple primary cancers, and significantly improved survival when compared stage for stage to sporadic colon cancer survival rates. EPCAM gene accounting for an estimated 1% to 3% of all detectable HNPCC syndrome mutations. Studies indicate that large deletions in the end of this gene can lead to a loss of MSH2 expression and result in HNPCC. Genetic testing can confirm the diagnosis of HNPCC and can also identify presymptomatic individuals among the patient's relatives.

Specimen Requirements

Test Includes

Deletion/duplication analysis of the terminal region of the EPCAM gene

Limitations

Copy number variations are assessed by multiple-ligation-probe amplification assay (MLPA) to detect deletions and duplications of exons 8 and 9 in the EPCAM gene. Copy number analyses are designed to detect single exon, multi-exon, and full gene deletions or duplications. These analyses may not detect certain genomic rearrangements, such as translocations (balanced or unbalanced), inversions, or some partial exon rearrangements. This assay cannot determine exact breakpoints of deletions or duplications detected.

This test is not intended to detect somatic variants. Bone marrow transplantation may affect the outcome of these results. Please contact LabCorp to discuss testing options at 1-800-345-GENE.

This test was developed, and its performance characteristics determined, by LabCorp. It has not been cleared or approved by the US Food and Drug Administration (FDA).

References

Kang SY, Park CK, Chang DK, et al. Lynch-like syndrome: Characterization and comparison with EPCAM deletion carriers. Int J Cancer. 2015 Apr;136(7):1568-1578. doi: 10.1002/ijc. 29133.25110875
Kohlmann W, Gruber SB. Lynch syndrome. In: Pagon RA, Adam MP, Ardinger HH, et al, eds. GeneReviews®. 2004 Feb 5; Seattle, Wash: University of Washington;1993-2014. Available at: http://www.ncbi.nlm.nih.gov/books/NBK1211/.20301390
Online Mendelian Inheritance in Man (OMIM™). Colorectal cancer, hereditary nonpolyposis, type 8; HNPCC8. Baltimore, Md: Johns Hopkins University. Available at: http://www.ncbi.nlm.nih.gov/omim/613244.
Online Mendelian Inheritance in Man (OMIM™). Epithelial cellular adhesion molecule; EPCAM. Baltimore, Md: Johns Hopkins University. Available at: http://omim.org/entry/185535.
Online Mendelian Inheritance in Man (OMIM™). Lynch syndrome I. Baltimore, Md: Johns Hopkins University. Available at: http://www.ncbi.nlm.nih.gov/omim/120435.
Online Mendelian Inheritance in Man (OMIM™). MutS, E coli, homolog of, 2; MSH2. Baltimore, Md: Johns Hopkins University. Available at:http://www.ncbi.nlm.nih.gov/omim/609309.
Online Mendelian Inheritance in Man (OMIM™). Postmeiotic segregation increased, S cerevisiae, 2; PMS2. Baltimore, Md: Johns Hopkins University. Available at: http://www.ncbi.nlm.nih.gov/omim/600259.

Specimen

Whole blood

Volume

7 mL

Minimum Volume

4 mL

Container

Lavender-top (EDTA) tube

Storage Instructions

Maintain specimen at room temperature.

Causes for Rejection

Container broken or leaking; container not labeled; improper anticoagulant

LOINC® Map

Order Code Order Code Name Order Loinc Result Code Result Code Name UofM Result LOINC
511654 EPCAM Deletion/Duplication 511679 Test Order Review N/A
511654 EPCAM Deletion/Duplication 511652 Tracking N/A
511654 EPCAM Deletion/Duplication 512123 PDF 11502-2
Order Code511654
Order Code NameEPCAM Deletion/Duplication
Order Loinc
Result Code511679
Result Code NameTest Order Review
UofM
Result LOINCN/A
Order Code511654
Order Code NameEPCAM Deletion/Duplication
Order Loinc
Result Code511652
Result Code NameTracking
UofM
Result LOINCN/A
Order Code511654
Order Code NameEPCAM Deletion/Duplication
Order Loinc
Result Code512123
Result Code NamePDF
UofM
Result LOINC11502-2
Reflex Table for Test Order Review
Order Code Order Name Result Code Result Name UofM Result LOINC
Reflex 1 511678 EPCAM Deletion/Duplication 511648 Specimen Type 31208-2
Reflex 1
Order Code511678
Order NameEPCAM Deletion/Duplication
Result Code511648
Result NameSpecimen Type
UofM
Result LOINC31208-2
Reflex Table for Test Order Review
Order Code Order Name Result Code Result Name UofM Result LOINC
Reflex 1 511678 EPCAM Deletion/Duplication 511649 Result 79418-0
Reflex 1
Order Code511678
Order NameEPCAM Deletion/Duplication
Result Code511649
Result NameResult
UofM
Result LOINC79418-0
Reflex Table for Test Order Review
Order Code Order Name Result Code Result Name UofM Result LOINC
Reflex 1 511678 EPCAM Deletion/Duplication 511651 Director Review 72486-4
Reflex 1
Order Code511678
Order NameEPCAM Deletion/Duplication
Result Code511651
Result NameDirector Review
UofM
Result LOINC72486-4
Reflex Table for Test Order Review
Order Code Order Name Result Code Result Name UofM Result LOINC
Reflex 1 511678 EPCAM Deletion/Duplication 512123 PDF 11502-2
Reflex 1
Order Code511678
Order NameEPCAM Deletion/Duplication
Result Code512123
Result NamePDF
UofM
Result LOINC11502-2