Test Details
Methodology
Amplicon-based Next Generation Sequencing
Result Turnaround Time
7 days
Turnaround time is defined as the usual number of days from the date of pickup of a specimen for testing to when the result is released to the ordering provider. In some cases, additional time should be allowed for additional confirmatory or additional reflex tests. Testing schedules may vary.
Use
Molecular testing of blood or bone marrow is useful in the evaluation of suspected myeloproliferative neoplasms (MPN). This test will assess mutations in JAK2 exons 12, 13, 14 and 15.
The JAK2 (Janus kinase 2) gene encodes for a non-receptor protein tyrosine kinase that activates cytokine and growth factor signaling. The V617F (c.1849 G>T) mutation results in constitutive activation of JAK2 and downstream STAT5 and ERK signaling. The V617F mutation is observed in approximately 95% of polycythemia vera (PV), 60% of essential thrombocythemia (ET) and primary myelofibrosis (PMF). It is also infrequently present (3-5%) in myelodysplastic syndrome, chronic myelomonocytic leukemia and other atypical chronic myeloid disorders. A small percentage of JAK2 mutation-positive patients (3.3%) contain other non-V617F mutations within exons 12 to 15. In particular, mutations in exon 12 of JAK2 have been described in approximately 3% of patients with PV. JAK2 mutation allele burden correlates with clinical phenotype, with low levels of mutant allele characterized by thrombocytosis, intermediate levels with erythrocytosis and high mutant allele burden, correlating with enhanced myelopoiesis of the BM, leukocytosis, increasing spleen size and circulating CD34-positive cells.
Limitations
This assay has a sensitivity of approximately 1% VAF for JAK2V617F and 2.5% VAF for other mutations in JAK2 exons 12 to 15. Deletions in JAK2 up to 6 bp and insertions up to 34 bp have been detected in validation studies.
This test was developed and its performance characteristics determined by Labcorp. It has not been cleared or approved by the Food and Drug Administration.
Specimen Requirements
Specimen
Whole blood or bone marrow
Volume
3 to 5 mL whole blood or 1 to 2 mL bone marrow
Minimum Volume
3 mL whole blood or 1 mL bone marrow
Container
Lavender-top (EDTA) tube, green-top (sodium heparin) tube, yellow-top (ACD) tube, tan-top (K2-EDTA) tube or pink-top (K2-EDTA) tube
Collection Instructions
Submit at room temperature. Specimens should arrive in the laboratory within 48 hours of collection. Indicate date and time of collection on test request form.
Storage Instructions
Ship at room temperature. If specimen is to be stored prior to shipment, store at 2°C to 8°C.
Causes for Rejection
Specimen does not meet all of the criteria for sample type, container, minimum volume, collection and storage; frozen whole blood or marrow; leaking tube; clotted blood or marrow; grossly hemolyzed or otherwise visibly degraded; contamination by another specimen; specimen containing foreign material
References
LOINC® Map
Order Code | Order Code Name | Order Loinc | Result Code | Result Code Name | UofM | Result LOINC |
---|---|---|---|---|---|---|
489501 | NGS JAK2 Exons 12-15 | 48726-4 | 489532 | Specimen Type | 66746-9 | |
489501 | NGS JAK2 Exons 12-15 | 48726-4 | 489502 | E12-15 Result | 48726-4 | |
489501 | NGS JAK2 Exons 12-15 | 48726-4 | 489503 | E12-15 % | % | N/A |
489501 | NGS JAK2 Exons 12-15 | 48726-4 | 489504 | E12-15 Nucleotide | 48004-6 | |
489501 | NGS JAK2 Exons 12-15 | 48726-4 | 489506 | E12-15 Amino Acid | 48005-3 | |
489501 | NGS JAK2 Exons 12-15 | 48726-4 | 489507 | E12-15 Background | 62364-5 | |
489501 | NGS JAK2 Exons 12-15 | 48726-4 | 489508 | Method | 49549-9 | |
489501 | NGS JAK2 Exons 12-15 | 48726-4 | 489509 | E12-15 References | 75608-0 | |
489501 | NGS JAK2 Exons 12-15 | 48726-4 | 489510 | Director Review | 72486-4 | |
Order Code | 489501 | |||||
Order Code Name | NGS JAK2 Exons 12-15 | |||||
Order Loinc | 48726-4 | |||||
Result Code | 489532 | |||||
Result Code Name | Specimen Type | |||||
UofM | ||||||
Result LOINC | 66746-9 | |||||
Order Code | 489501 | |||||
Order Code Name | NGS JAK2 Exons 12-15 | |||||
Order Loinc | 48726-4 | |||||
Result Code | 489502 | |||||
Result Code Name | E12-15 Result | |||||
UofM | ||||||
Result LOINC | 48726-4 | |||||
Order Code | 489501 | |||||
Order Code Name | NGS JAK2 Exons 12-15 | |||||
Order Loinc | 48726-4 | |||||
Result Code | 489503 | |||||
Result Code Name | E12-15 % | |||||
UofM | % | |||||
Result LOINC | N/A | |||||
Order Code | 489501 | |||||
Order Code Name | NGS JAK2 Exons 12-15 | |||||
Order Loinc | 48726-4 | |||||
Result Code | 489504 | |||||
Result Code Name | E12-15 Nucleotide | |||||
UofM | ||||||
Result LOINC | 48004-6 | |||||
Order Code | 489501 | |||||
Order Code Name | NGS JAK2 Exons 12-15 | |||||
Order Loinc | 48726-4 | |||||
Result Code | 489506 | |||||
Result Code Name | E12-15 Amino Acid | |||||
UofM | ||||||
Result LOINC | 48005-3 | |||||
Order Code | 489501 | |||||
Order Code Name | NGS JAK2 Exons 12-15 | |||||
Order Loinc | 48726-4 | |||||
Result Code | 489507 | |||||
Result Code Name | E12-15 Background | |||||
UofM | ||||||
Result LOINC | 62364-5 | |||||
Order Code | 489501 | |||||
Order Code Name | NGS JAK2 Exons 12-15 | |||||
Order Loinc | 48726-4 | |||||
Result Code | 489508 | |||||
Result Code Name | Method | |||||
UofM | ||||||
Result LOINC | 49549-9 | |||||
Order Code | 489501 | |||||
Order Code Name | NGS JAK2 Exons 12-15 | |||||
Order Loinc | 48726-4 | |||||
Result Code | 489509 | |||||
Result Code Name | E12-15 References | |||||
UofM | ||||||
Result LOINC | 75608-0 | |||||
Order Code | 489501 | |||||
Order Code Name | NGS JAK2 Exons 12-15 | |||||
Order Loinc | 48726-4 | |||||
Result Code | 489510 | |||||
Result Code Name | Director Review | |||||
UofM | ||||||
Result LOINC | 72486-4 |